Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015948979.1_cds_XP_016490072.1_80532
CDS Infomation

[gene=LOC107809890] [db_xref=GeneID:107809890] [protein=pentatricopeptide repeat-containing protein At5g14080-like] [protein_id=XP_016490072.1] [location=complement(join(16003..16209,17757..17992,18272..19931))] [gbkey=CDS]
Sequence

ATGATGAAACGATCAGTAGGGGAGTTGGCAAGTGTAATAAGCCGGGCTCTCATCCACGGA
TCAAAGCAAAGCAGCCCAAGCCAAACATGGACTCCAGCGTTAGAGCAAACGTTGTACAGC
CTCGGATGTCGGGAATCTCTCAGTCCGACACTCGTCGCCCGAGTCATCGATCCTTGCCTT
GTCCACCACCATTCCCTTGCTCTTGGTTTCTTCAACTGGGCTTCTCAGCAACCTGGATTC
TCCCACGACTCCTCCACTTACCATTCCATTCTCAAGTCTCTTTGCATTTCCCGTCAGTTC
AATACCCTTGATAAGCTCTTTAAGCAGGTAAAAGCTCAGAAAATCCGCCTTCATCCTTCG
CTTTATCGTTCTGTCATTGCTTCCCAGATCATTGGTAAGAAATCCCACTTAGCATTTTCC
GTTTTCAGTGAGGTTCCTTCGTTGGCATCAGAGATTGGATCCCAAACTTGTAATTCACTT
CTTGCTGCTCTGTCATCGGAAGGTAACTATAAATGTGCTTTCCAGGTGTTCGACGAAATG
AATCGCAGAGGTGTTCGGTTGAACACACTTGGTTTTGGTGTGTTTCTGTGGAGATTCTGC
GGATTTAATGGATTGGAAAAGAGTTTGAGTTTGTTAGATGAGGTCAGGAAGATTGACTTT
TCTGGGATTAATGGATCCGTTGTTGCAGTTCTAGTCGTACAAGGGTTATGCTCTGGTTCT
AGGATAGCTGAAGCTGTTTCTGCTTTTGATGAATTGAGGATAAGGGAGTGTAAACCTGAT
TTTATTGCTTATAGCGTTGTTGCTGAAGCGTTGGGGAATATGCGAAACGTAGTTGACAAA
GAGTTGGTTTTGAAGAAGAAGAGAAAACTAGGAGTGGCTCCGAGGAATAATGATTATAAA
GAGTTCATCTTTGATTTGATTTCAGAGAGGCTGATTTCCGAAGCTAAAGAGTTGGGCAAA
GTAATTGCATCTGGGAAATTTCCAATGGATGATGATCTGCTCAATGCTTTGCTAGGATCG
GTATCAGCTAGTGATCCTGGACTCGCCATCTTCTTTTTAAACTTCATGCTGGGTAGAGAA
ACGGAGCCTAATCTTGTTACTGTGACGAGTTTAAGTGCAAACCTTTGTAAGCATGGAAAG
ATTGATGAATTGCTAGAAGTATTTCAAAAGTTGTCCGCTATAAACTATTTTACTGATACA
CAGAGTTATAATATTATGGTTTCATTTCTGTGCAAGGCTGGTAAAGTTAGAGAAGCTTAC
GAGGTTCTTCGTGACATGAGAAGGAAAGGTGCAGTTCCTGATATACAATCTTATAATCTC
CTGCTAGAAGCTTGCTGTCGAGAAGATCTACTGCGACCAGCTAAACGGTTGTGGGATGAG
ATGTTCACAAATGGGTGCCCTGGTAATTTAGAGACTTACAATATTCTTATTCAGAAGTGT
TCAGAAGAAGGAGAAATTGAAGATGCTTGTAGGCTTTTCAATGACATGACAGAGAAAGGA
GTAGTACCTGAGGCTATTACATATAATTCAGTCCTTAAAGGGCTTTATCAAGCAAAAAAT
CTCAAAATGGCTCTTGAAATATTCAACAGATGTGCTATGCAGGATCCAACCATTGCACGA
TCCGTCTTGTGTACATTCATCCTCAGCCTCTGCAAGGAAGGTCATTTGCTTCCTGCAATG
GAGTTACTTCGTGGCCAAAGCTCTGATATTGCATTTTTAGACTCTCATCTGATTTTTCTT
AAATTTTTAGCCGATGCTGGAGAAATAAGTATGGCTGTTGAACATTTGAAGTGGATTCAA
GGCAAATCTCCTTCGATGTATCAGGCACTGAGCAATGAAATATTGGCATCAATCTCATCT
TCTTCAAAACCAGATCCAATTCTCAAGTTATTTCAAGGGCTCTTGGACGTTGTACGCACA
ATACTCCCAGATGCACATCACAGATTTTGTGTGAGATATATTGAAGCTAATTGGATGAAG
AAGTGGAGGAGTGGTGAAATGAAGAAACTATTATGGTGGTGTGCCTGGAGTACTTATAAG
GAAGAGTTCAAAGACCAACTAAAGAAGCTAGGGGAATTGGATGAAGAAGTGGAGGAGTGG
TGA

Peptide Sequence

PEP ID

XP_016490072.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Nicotiana tabacum]
Sequence

MMKRSVGELASVISRALIHGSKQSSPSQTWTPALEQTLYSLGCRESLSPTLVARVIDPCL
VHHHSLALGFFNWASQQPGFSHDSSTYHSILKSLCISRQFNTLDKLFKQVKAQKIRLHPS
LYRSVIASQIIGKKSHLAFSVFSEVPSLASEIGSQTCNSLLAALSSEGNYKCAFQVFDEM
NRRGVRLNTLGFGVFLWRFCGFNGLEKSLSLLDEVRKIDFSGINGSVVAVLVVQGLCSGS
RIAEAVSAFDELRIRECKPDFIAYSVVAEALGNMRNVVDKELVLKKKRKLGVAPRNNDYK
EFIFDLISERLISEAKELGKVIASGKFPMDDDLLNALLGSVSASDPGLAIFFLNFMLGRE
TEPNLVTVTSLSANLCKHGKIDELLEVFQKLSAINYFTDTQSYNIMVSFLCKAGKVREAY
EVLRDMRRKGAVPDIQSYNLLLEACCREDLLRPAKRLWDEMFTNGCPGNLETYNILIQKC
SEEGEIEDACRLFNDMTEKGVVPEAITYNSVLKGLYQAKNLKMALEIFNRCAMQDPTIAR
SVLCTFILSLCKEGHLLPAMELLRGQSSDIAFLDSHLIFLKFLADAGEISMAVEHLKWIQ
GKSPSMYQALSNEILASISSSSKPDPILKLFQGLLDVVRTILPDAHHRFCVRYIEANWMK
KWRSGEMKKLLWWCAWSTYKEEFKDQLKKLGELDEEVEEW

Transcript Sequence

Gene sequence data has not been registered.